- Nail M Gizzatkulov, Igor I Goryanin, Eugeny A Metelkin, Ekaterina A Mogilevskaya, Kirill V Peskov and Oleg V Demin. DBSolve Optimum: a software package for kinetic modeling which allows dynamic visualization of simulation results. BMC Systems Biology (2010), 4:109.
- Peskov K., Demin O. Kinetic model of phosphofructokinase-2 from Escherichia coli. Voprosi Bio Med Pharm Chem (Moscow). (2010) №5, 11-22.
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- Smirnov S., Belashov A., Demin O. Optimization of antimicrobial drug gramicidin S dosing regime using biosimulations. Europ J Pharmac Sciences (2009), 36(1), 105–109.
- Goltsov A., Maryashkin A., Swat M., Kosinsky Y., Humphery-Smith I., Demin O., Goryanin I., Lebedeva G. Kinetic modelling of NSAID action on COX-1: focus on in vitro/in vivo aspects and drug combinations. Europ J Pharmac Sciences (2009), 36(1), 122–136.
- Metelkin E., Lebedeva G., Goryanin I., Demin O. Kinetic model of beta-galactosidase of Escherichia coli. Biophysics (Moscow) V. 54 (2), pp. 226-234.
- Mogilevskaya E., Peskov K., Metelkin E., Plyusnina T., Lebedeva G., Goryanin I., Demin O. Kinetic modeling of E. coli enzymes: integration of in vitro data. IN: Systems Biology and Biotechnology of Esherichia coli. pp. 177 - 207, (2009), (Editor: Sang Yup Lee), Springer Netherlands.
- Mogilevskaya E., Bagrova N., Plyusnina T., Gizzatkulov N., Metelkin E., Goryacheva E., Smirnov S., Kosinsky Y., Dorodnov A., Peskov K., Karelina T., Lebedeva G., Goryanin I. and Demin O. Kinetic modeling as a tool to integrate multilevel dynamic experimental data. Methods Mol Biol. (2009), 563, 197-218
- Eugeniy Metelkin, Oleg Demin, Zsuzsanna Kovacs and Christos Chinopoulos. Modeling of ATP–ADP steady-state exchange rate mediated by the adenine nucleotide translocase in isolated mitochondria. FEBS J. (2009) 276, 6942–6955.
- D. Lesovoy, E. Bocharov, E. Lyukmanova, Yu. Kosinsky, M. Shulepko, D. Dolgikh, M. Kirpichnikov, R. Efremov, Arseniev A. Specific Membrane Binding of Neurotoxin II Can Facilitate its Delivery to Acetylcholine Receptor. Biophys. J. (2009) 97: 2089-2097.
- Svirishchevskaya EV, Lysenko AA, Matushevskaya EV, Kosinsky YA, Dementyeva DV, Prokhorov AV. Autoimmune pemphigus: identification of pathgenic epitopes of desmoglein 3. Modern problems of dermatovenerology, immunology and medical cosmetology. (2009) 3, 5-12.
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- N.I. Fedotcheva, E.G. Litvinova, Z.G. Amerkhanov, S.V. Kamzolova, I.G. Morgunov and M.N. Kondrashova. Increase in the contribution of transamination to the respiration of mitochondria during arousal. CryoLetters, (2008), 29(1), 35-42.
- Peskov K., Goryanin I., Demin O. Kinetic Model of Phosphofructokinase-1 from Escherichia coli. J Bioinform Comput Biol (2008) 6(4): 843-67.
- Peskov K., Goryanin I., Prank K., Tobin F., Demin O. Kinetic Modeling of ace operon genetic regulation in Escherichia coli. J Bioinform Comput Biol (2008), 6(5): 933-959.
- Demin O., Goryanin I. Kinetic Modelling in Systems Biology. Taylor & Francis (United States), (2008), pp.360
- E.A.Mogilevskaya, O.V.Demin. Investigation of salicylate influence on the mitochondrial Krebs cycle using kinetic model. SICPRO’08 Proceedings of the VII International Conference “System Identification And Control Problems". (2008), pp. 1235-1245.
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- Mogilevskaya E. A., Lebedeva G. V., Goryanin I. I., Demin O. V. Kinetic model of Escherichia coli isocitrate dehydrogenase functioning and regulation. Biophysics (Moscow), (2007), 52(1), p. 47-56.
- Hongwu Ma, Anatoly Sorokin, Alexander Mazein, Alex Selkov, Evgeni Selkov, Oleg Demin, Igor Goryanin. The Edinburgh human metabolic network reconstruction and its functional analysis. Molecular Systems Biology. 3 Article number: 135 (Published online: 18 September 2007).
- Pyrkov, T.V., Kosinsky, Yu.A, Arseniev, A.S., Priestle, J.P., Jacoby, E., Efremov, R.G. Docking of ATP to Ca-ATPase: Considering Protein Domain Motions. J. Chem. Inf. Model (2007), 47, 1171–1181.
- Pyrkov T.V., Kosinsky Yu.A., Arseniev A.S., Priestle J.P., Jacoby E., Efremov R.G. Complementarity of hydrophobic properties in ATP-protein binding: a new criterion to rank docking solutions. Proteins: Structure, Function, and Bioinformatics (2007) 66(2), 388–398.
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